MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-9-P2  Cmi-Mir-9-P4 
Orthologues Aca-Mir-9-P1  Ami-Mir-9-P1  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Dre-Mir-9-P1b  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Hme-Mir-9-o1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ovu-Mir-9  Pbv-Mir-9-P1  Pma-Mir-9-o1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Tni-Mir-9-P1b  Xbo-Mir-9  Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xtr-Mir-9-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI636065.1: 729079-729138 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCGGGAGUAGGAGCGGAAGCGGCUGCUGUCUUUGGUUAUCUAGCUGUAUGAGUUUAUUCACCGUCAUAAAGCUAAAUAACCGAAAGUAGGAGCCCCUUCCCCAGCCUCGCACCGCCCA
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Structure
        10          20        30        40        50         
CUCCGGGAGUAGGAGCG--|   C    G   UC         C     G     GUUUA 
                   GAAG GGCU CUG  UUUGGUUAU UAGCU UAUGA     U
                   CUUC CCGA GAU  AAGCCAAUA AUCGA AUACU     U
ACCCGCCACGCUCCGACCC^   C    G   GA         A     A     GCCAC 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-9-P1_5p

mirBase accessionNone
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Cmi-Mir-9-P1_3p*

mirBase accessionNone
Sequence
37- AUAAAGCUAAAUAACCGAAAGUA -60
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