Mir-9-P1

MirGeneDB ID

Pbv-Mir-9-P1

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-9-3

Paralogues

Pbv-Mir-9-P2 Pbv-Mir-9-P3 Pbv-Mir-9-P4

Orthologues

Aca-Mir-9-P1 Ami-Mir-9-P1 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Cfa-Mir-9-P1 Cin-Mir-9 Cmi-Mir-9-P1 Cpi-Mir-9-P1 Cpo-Mir-9-P1 Cte-Mir-9 Dno-Mir-9-P1 Dre-Mir-9-P1a Dre-Mir-9-P1b Esc-Mir-9 Ete-Mir-9-P1 Gga-Mir-9-P1 Gja-Mir-9-P1 Gmo-Mir-9-P1a Gmo-Mir-9-P1b Hme-Mir-9-o1 Hsa-Mir-9-P1 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P1 Lgi-Mir-9 Loc-Mir-9-P1 Mal-Mir-9-P1a Mal-Mir-9-P1b Mdo-Mir-9-P1 Mml-Mir-9-P1 Mmu-Mir-9-P1 Mun-Mir-9-P1 Npo-Mir-9 Oan-Mir-9-P1 Obi-Mir-9 Ocu-Mir-9-P1 Ovu-Mir-9 Pma-Mir-9-o1 Pmi-Mir-9 Rno-Mir-9-P1 Sha-Mir-9-P1 Spt-Mir-9-P1 Spu-Mir-9 Sto-Mir-9-P1 Tgu-Mir-9-P1 Tni-Mir-9-P1a Tni-Mir-9-P1b Xbo-Mir-9 Xla-Mir-9-P1c Xla-Mir-9-P1d Xtr-Mir-9-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE955498.1: 5679-5740 [+]

Precursor
(pre-Mir +30nt flank)

AGCGAGCCUCAUGCGGGAGGGCCGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUAUCAAGCCAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAAAGACUUCUGGGAAUUG

Get precursor sequence

Structure

        10        20          30        40        50        60
AGCGAGCCUCAUGCGGGA   C--|       UC               G     GUGUUA 
                  GGG   CGUUUCUG  UUUGGUUAUCUAGCU UAUGA      U
                  CCU   GUAAAGAU  AAGCCAAUAGAUCGA AUACU      C
GUUAAGGGUCUUCAGAAA   UCA^       GA               A     ACCGAA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Pbv-Mir-9-P1_5p

mirBase accession

MIMAT0038821

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Star sequence

Pbv-Mir-9-P1_3p*

mirBase accession

MIMAT0038822

Sequence

39- AUAAAGCUAGAUAACCGAAAGUA -62

Get sequence