MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-9-3
Paralogues Xtr-Mir-9-P2  Xtr-Mir-9-P3  Xtr-Mir-9-P4 
Orthologues Aca-Mir-9-P1  Ami-Mir-9-P1  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Dre-Mir-9-P1b  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Hme-Mir-9-o1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Loc-Mir-9-P1  Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ovu-Mir-9  Pbv-Mir-9-P1  Pma-Mir-9-o1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Tni-Mir-9-P1b  Xbo-Mir-9  Xla-Mir-9-P1c  Xla-Mir-9-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr3: 99283857-99283918 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAAGGCCAGGAUGGGGAGUUUGUUUCUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAAAUAAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGGAAUCACUUCCAAGGCGUCACCUUAGCCG
Get precursor sequence
Structure
        10           20        30        40        50        60
CUGAAGGCCAGGAUGGG---|   UU       UC               G     GUGUAA 
                    GAGU  GUUUCUA  UUUGGUUAUCUAGCU UAUGA      A
                    UUCA  UAAGGAU  AAGCCAAUAGAUCGA AUACU      U
GCCGAUUCCACUGCGGAACC^   C-       GA               A     GCCGAA 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-9-P1_5p

mirBase accessionMIMAT0003649
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Proposed targets TargetScanVert: xtr-miR-9-5p
Star sequence

Xtr-Mir-9-P1_3p*

mirBase accessionMIMAT0003650
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
Proposed targets TargetScanVert: xtr-miR-9-3p