MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-9-P4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-9b
Paralogues Xtr-Mir-9-P1  Xtr-Mir-9-P2  Xtr-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mun-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pma-Mir-9-o4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr1: 102034638-102034697 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGUAUCCUGGCUUUGAAUUGGUUUCUGUCUUUGGUUACCUAGCUGUAUGAGUAUAACUAAUGUCAUAAAGCUAGACAACCGAACGUAUAAACCAGUUCCUCCAUCUUCACAGCAGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GGAAGUAUCCUGGCUUU--|         C  UC       AC      G     GUAUA 
                   GAAUUGGUUU UG  UUUGGUU  CUAGCU UAUGA     A
                   CUUGACCAAA AU  AAGCCAA  GAUCGA AUACU     C
GAGACGACACUUCUACCUC^         U  GC       CA      A     GUAAU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-9-P4_5p

mirBase accessionMIMAT0003555
Sequence
0- UCUUUGGUUACCUAGCUGUAUGA -23
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Proposed targets TargetScanVert: xtr-miR-9b-5p
Star sequence

Xtr-Mir-9-P4_3p*

mirBase accessionMIMAT0003556
Sequence
37- AUAAAGCUAGACAACCGAACGUA -60
Get sequence
Proposed targets TargetScanVert: xtr-miR-9b-3p