MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-9-o4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-9-o1  Pma-Mir-9-o2  Pma-Mir-9-o3  Pma-Mir-9-o5 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mun-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046120.1: 4110016-4110075 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCACGCCGCGCGGGCCGGUGGCGGCGUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUCGGCUUCAUAAAGCUAGAUUACCGAAAGUAAUGCCGCUUCCACGAGACGCUACCGCCACC
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Structure
        10          20         30        40        50         
GCCACGCCGCGCGGGCC--  U         -| C      U        G    AGUGUU 
                   GG GGCGGCGUU CU UUUGGU AUCUAGCU UAUG      C
                   CC UCGCCGUAA GA AAGCCA UAGAUCGA AUAC      U
CCACCGCCAUCGCAGAGCA  U         U^ -      U        A    UUCGGC 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-9-o4_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Star sequence

Pma-Mir-9-o4_3p*
mirBase accessionNone
Sequence 
38- UAAAGCUAGAUUACCGAAAGUA -60
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