MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-9-P4b

Family name MIR-9 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-9-7
Paralogues Dre-Mir-9-P1a  Dre-Mir-9-P1b  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Dre-Mir-9-P3a  Dre-Mir-9-P4a 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4b  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr2: 59102181-59102239 [-] UCSC Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
GCCCCUUUAACGCGCACGGGUUAGUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUUAUGAAAUAUCAUAAAGCUAGAGAACCGAAAGUAGAAACUAUACCUACAGACUUCAUGACGCGC
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Structure
        10         20          30        40        50         
GCCCCUUUAACGCGCAC-    -        -| C       A       G     GUUAU 
                  GGGU UAGUUUUU CU UUUGGUU UCUAGCU UAUGA     \
                  UCCA AUCAAAGA GA AAGCCAA AGAUCGA AUACU     G
CGCGCAGUACUUCAGACA    U        U^ -       G       A     AUAAA 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-9-P4b_5p
mirBase accessionMIMAT0001769
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Proposed targets TargetScanFish: dre-miR-9
Star sequence

Dre-Mir-9-P4b_3p*
mirBase accessionMIMAT0031933
Sequence 
36- AUAAAGCUAGAGAACCGAAAGUA -59
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