MirGeneDB 2.1
MirGeneDB ID

Mun-Mir-9-P4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-9-P1  Mun-Mir-9-P2  Mun-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pma-Mir-9-o4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Mun_miRNA_loci)		 9-P4_LR594642.1:76034470-76034729: 101-160 [+]
Precursor
(pre-Mir +30nt flank)
UUGGGUUUGCCAGAGCCGAGUUCGUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUAUCUGAUGUCAUAAAGCUAGAAAACCGAAUGUAAAACCGGAUUCAAUGAGCUGCGAUGGCAGA
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Structure
        10          20        30        40        50         
UUGGGUUUGCCAGAGCC--|      U    CUC       A       G     GUGUA 
                   GAGUUCG UUUU   UUUGGUU UCUAGCU UAUGA     U
                   CUUAGGC AAAA   AAGCCAA AGAUCGA AUACU     C
AGACGGUAGCGUCGAGUAA^      C    UGU       A       A     GUAGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Mun-Mir-9-P4_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Mun-Mir-9-P4_3p* (predicted)
mirBase accessionNone
Sequence 
37- AUAAAGCUAGAAAACCGAAUGUA -60
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