MirGeneDB ID | Cpi-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-9-4
|
Paralogues |
Cpi-Mir-9-P1
Cpi-Mir-9-P2
Cpi-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P4
Ami-Mir-9-P4
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cte-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Hme-Mir-9-o4
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mun-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ovu-Mir-9
Pbv-Mir-9-P4
Pma-Mir-9-o4
Pmi-Mir-9
Sha-Mir-9-P4
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (chrPic1) |
JH584400: 2327223-2327282 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUAUAUUGAAAGGACUGGGUUGGUUUUUGUCUUUGGUUAUCUAGCUGUAUGAGUGUAUGUGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAACUGAUUCACUAUUCUCCAGGACUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUAUAUUGAAAGGACU--| UG UC A G GUGUA
GGGU GUUUUUG UUUGGUU UCUAGCU UAUGA U
CUUA CAAAAAU AAGCCAA AGAUCGA AUACU G
CCUUCAGGACCUCUUAUCA^ GU GU G A AUAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-9-P4_5p |
mirBase accession | MIMAT0037622 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Cpi-Mir-9-P4_3p* |
mirBase accession | MIMAT0037624 |
Sequence |
37- AUAAAGCUAGAGAACCGAAUGUA -60
Get sequence
|