| MirGeneDB ID | Lch-Mir-9-P4 |
|---|---|
| Family name | MIR-9 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-9-P1 Lch-Mir-9-P2 Lch-Mir-9-P3 |
| Orthologues | Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4a Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4a Gmo-Mir-9-P4b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4a Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4a Tni-Mir-9-P4b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P4c Xla-Mir-9-P4d Xtr-Mir-9-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH127544.1: 777103-777162 [-] Ensembl |
| Seed | CUUUGGU |
| Precursor (pre-Mir +30nt flank) |
GUAGCCUUUUAAGAAAUAGGUUAGUUUUUUUCUUUGGUUAUCUAGCUGUAUGAGUGUAUCUGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAACUAAUUCUGACUUCUUCAACUUCUCAGet precursor sequence |
| Structure | 10 20 30 40 50 GUAGCCUUUUAAGAAAUA--| UUC A G GUGUA GGUUAGUUUUU UUUGGUU UCUAGCU UAUGA U UUAAUCAAAAA AAGCCAA AGAUCGA AUACU C ACUCUUCAACUUCUUCAGUC^ UGU G A AUAGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-9-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
| Star sequence | Lch-Mir-9-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- AUAAAGCUAGAGAACCGAAUGUA -60
Get sequence
|
