Mir-9-P4b

MirGeneDB ID

Tni-Mir-9-P4b

Family name

MIR-9 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-9-P1a Tni-Mir-9-P1b Tni-Mir-9-P2b Tni-Mir-9-P3a Tni-Mir-9-P3b Tni-Mir-9-P4a

Orthologues

Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Neu-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 War-Mir-9 Xbo-Mir-9 Xtr-Mir-9-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 105862125-105862181 [-] UCSC Ensembl

Seed

CUUUGGU

Precursor
(pre-Mir +30nt flank)

CCCCUUUAAGAGACCACGGGUUAGUUUGUGUCUUUGGUUAUCUAGCUGUAUGAGUUUUAAUUUCAUAAAGCUAGAGAACCGAAAGUACGAACUGACGCCGAGCACUUCGGAGCGCAG

Get precursor sequence

Structure

        10          20        30        40        50        
CCCCUUUAAGAGACCAC-  -|          UC       A       G     GUUU 
                  GG GUUAGUUUGUG  UUUGGUU UCUAGCU UAUGA    \
                  CC CAGUCAAGCAU  AAGCCAA AGAUCGA AUACU    U
GACGCGAGGCUUCACGAG  G^          GA       G       A     UUAA 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-9-P4b_5p

mirBase accession

None

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Star sequence

Tni-Mir-9-P4b_3p*

mirBase accession

None

Sequence

34- AUAAAGCUAGAGAACCGAAAGUA -57

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