MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-9-P4

Family name MIR-9 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-9-P1  Tgu-Mir-9-P2  Tgu-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)		 28: 413624-413683 [+] UCSC Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
GCGCUGGCCGCAGACCUGGGAGGGCUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUGUCAGAUAUCAUAAAGCUAGAGAACCGAAUGUAAAAUCCCUCCCGCCACCCUCGGCCGCGGGC
Get precursor sequence
Structure
        10          20        30        40        50         
GCGCUGGCCGCAGACCU--|      C    CUC       A       G     GUGUG 
                   GGGAGGG UUUU   UUUGGUU UCUAGCU UAUGA     U
                   CCCUCCC AAAA   AAGCCAA AGAUCGA AUACU     C
CGGGCGCCGGCUCCCACCG^      U    UGU       G       A     AUAGA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-9-P4_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Star sequence

Tgu-Mir-9-P4_3p*
mirBase accessionNone
Sequence 
37- AUAAAGCUAGAGAACCGAAUGUA -60
Get sequence