MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-9-P4

Family name MIR-9 (all species)
Seed CUUUGGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-9-P1  Gja-Mir-9-P2  Gja-Mir-9-P3 
Orthologues Aca-Mir-9-P4  Ami-Mir-9-P4  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Esc-Mir-9  Gga-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Hme-Mir-9-o4  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mun-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ovu-Mir-9  Pbv-Mir-9-P4  Pma-Mir-9-o4  Pmi-Mir-9  Sha-Mir-9-P4  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015162539.1: 184322-184381 [+]
Precursor
(pre-Mir +30nt flank)
AUACGGCCGGAAGACCUCGGUGGGUUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUCUAUAAUAUCAUAAAGCUAGCGAACCGAAUGUACAAACCCAUCUGUCGCUCGACGGAGUGUUC
Get precursor sequence
Structure
        10          20        30        40        50         
AUACGGCCGGAAGACCUC--|        UUCUC       AU      G     GUGUC 
                    GGUGGGUUU     UUUGGUU  CUAGCU UAUGA     U
                    CUACCCAAA     AAGCCAA  GAUCGA AUACU     A
CUUGUGAGGCAGCUCGCUGU^        CAUGU       GC      A     AUAAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-9-P4_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Star sequence

Gja-Mir-9-P4_3p*
mirBase accessionNone
Sequence 
37- AUAAAGCUAGCGAACCGAAUGUA -60
Get sequence