MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-9-P4

Family name MIR-9 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-9-P1  Cmi-Mir-9-P2 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Dre-Mir-9-P4a  Dre-Mir-9-P4b  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mal-Mir-9-P4a  Mal-Mir-9-P4b  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  Tni-Mir-9-P4a  Tni-Mir-9-P4b  War-Mir-9  Xbo-Mir-9  Xla-Mir-9-P4c  Xla-Mir-9-P4d  Xtr-Mir-9-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635918.1: 2272447-2272507 [+] UCSC Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
UGAGAAGCUUUAUCAAGAGGCCAGUUUUUCUCUUUGGUUUUCUAGCUGUAUGAGUGUGUUAUACCUUCAUAAAGCUAGACAACCGAAUGUAAGAACGGCUUUGAAUUUCAACCCUGUGGAU
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Structure
        10           20        30        40        50          
UGAGAAGCUUUAUCAAG---|    A      CUC       U       G     GUGUGU 
                    AGGCC GUUUUU   UUUGGUU UCUAGCU UAUGA      \
                    UUCGG CAAGAA   AAGCCAA AGAUCGA AUACU      U
UAGGUGUCCCAACUUUAAGU^    -      UGU       C       A     UCCAUA 
 .       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-9-P4_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUUUCUAGCUGUAUGA -23
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Star sequence

Cmi-Mir-9-P4_3p*
mirBase accessionNone
Sequence 
38- AUAAAGCUAGACAACCGAAUGUA -61
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