Mir-9-P4

MirGeneDB ID

Neu-Mir-9-P4

Family name

MIR-9 (all species)

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-9-P2 Neu-Mir-9-P3

Orthologues

Aca-Mir-9-P4 Agr-Mir-9 Ami-Mir-9-P4 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cli-Mir-9-P4 Cmi-Mir-9-P4 Cpi-Mir-9-P4 Cte-Mir-9 Dgr-Mir-9 Dre-Mir-9-P4a Dre-Mir-9-P4b Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gga-Mir-9-P4 Gja-Mir-9-P4 Gmo-Mir-9-P4a Gmo-Mir-9-P4b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P4 Lgi-Mir-9 Llo-Mir-9 Mal-Mir-9-P4a Mal-Mir-9-P4b Mdo-Mir-9-P4 Mom-Mir-9 Mun-Mir-9-P4 Npo-Mir-9 Oan-Mir-9-P4 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pbv-Mir-9-P4 Pdu-Mir-9 Pma-Mir-9-o4 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P4 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P4 Spu-Mir-9 Sto-Mir-9-P4 Tgu-Mir-9-P4 Tni-Mir-9-P4a Tni-Mir-9-P4b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P4c Xla-Mir-9-P4d Xtr-Mir-9-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051816.1: 66163226-66163284 [+] UCSC Ensembl

Seed

AAAGCUG

Precursor
(pre-Mir +30nt flank)

AGGGGGCCGGCUGCCCUGAGCUGGUUUUGAUCUUUGGUUUCCUAGCUGUGUGAGUAUUUCUGAAUCAUAAAGCUGGAGAACCGAAUGUGGAAACCAGCUGCUCCUGCACAGCCUGGCUA

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Structure

        10          20        30        40        50         
AGGGGGCCGGCUGCCCUG--|         G  C       UC      G    AGUAUU 
                    AGCUGGUUUU AU UUUGGUU  CUAGCU UGUG      \
                    UCGACCAAAG UG AAGCCAA  GGUCGA AUAC      U
AUCGGUCCGACACGUCCUCG^         G  U       GA      A    UAAGUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Star sequence

Neu-Mir-9-P4_5p*

mirBase accession

None

Sequence

0- UCUUUGGUUUCCUAGCUGUGUG -22

Get sequence

Mature sequence

Neu-Mir-9-P4_3p

mirBase accession

None

Sequence

37- UAAAGCUGGAGAACCGAAUGUG -59

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