MirGeneDB ID | Sha-Mir-9-P4 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-9-P1
Sha-Mir-9-P2
Sha-Mir-9-P3
|
Orthologues |
Aca-Mir-9-P4
Ami-Mir-9-P4
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cli-Mir-9-P4
Cmi-Mir-9-P4
Cpi-Mir-9-P4
Cte-Mir-9
Dre-Mir-9-P4a
Dre-Mir-9-P4b
Esc-Mir-9
Gga-Mir-9-P4
Gja-Mir-9-P4
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
Hme-Mir-9-o4
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P4
Lgi-Mir-9
Mal-Mir-9-P4a
Mal-Mir-9-P4b
Mdo-Mir-9-P4
Mun-Mir-9-P4
Npo-Mir-9
Oan-Mir-9-P4
Obi-Mir-9
Ovu-Mir-9
Pbv-Mir-9-P4
Pma-Mir-9-o4
Pmi-Mir-9
Spt-Mir-9-P4
Spu-Mir-9
Sto-Mir-9-P4
Tgu-Mir-9-P4
Tni-Mir-9-P4a
Tni-Mir-9-P4b
Xbo-Mir-9
Xla-Mir-9-P4c
Xla-Mir-9-P4d
Xtr-Mir-9-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
GL841420.1: 1045007-1045065 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGGGGCCGGCUGCCAUGAGCUGGUUUUGAUCUUUGGUUUCCUAGCUGUGUGAGUGUCUCUGAAUCAUAAAGCUGGAGAACCGAAUGUGGAAACCAGCUGCUCCUGCACAGCCUGGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGGGGCCGGCUGCCAUG--| G C UC G GUGUC
AGCUGGUUUU AU UUUGGUU CUAGCU UGUGA \
UCGACCAAAG UG AAGCCAA GGUCGA AUACU U
ACCGGUCCGACACGUCCUCG^ G U GA A AAGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-9-P4_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUUCCUAGCUGUGUGA -23
Get sequence
|
Star sequence |
Sha-Mir-9-P4_3p* |
mirBase accession | None |
Sequence |
36- AUAAAGCUGGAGAACCGAAUGUG -59
Get sequence
|