MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-9-P4d

Family name MIR-9 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xla-Mir-9-P4c 
Orthologues Aca-Mir-9-P4  Agr-Mir-9  Ami-Mir-9-P4  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cli-Mir-9-P4  Cmi-Mir-9-P4  Cpi-Mir-9-P4  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gga-Mir-9-P4  Gja-Mir-9-P4  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P4  Lgi-Mir-9  Llo-Mir-9  Mdo-Mir-9-P4  Mom-Mir-9  Mun-Mir-9-P4  Neu-Mir-9-P4  Npo-Mir-9  Oan-Mir-9-P4  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pbv-Mir-9-P4  Pdu-Mir-9  Pma-Mir-9-o4  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sha-Mir-9-P4  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P4  Spu-Mir-9  Sto-Mir-9-P4  Tgu-Mir-9-P4  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694812.1: 1485278-1485337 [-] UCSC Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
GGAAGUAUCCCGGCUUUGAAUUGGUUUCUGUCUUUGGUUACCUAGCUGUAUGAGUAUAUCUAAUGUCAUAAAGCUAGACAACCGAACGUAUAAACCAGUUCCCCCUUCUUCACAACAGAC
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Structure
        10          20        30        40        50         
GGAAGUAUCCCGGCUUU--|         C  UC       AC      G     GUAUA 
                   GAAUUGGUUU UG  UUUGGUU  CUAGCU UAUGA     U
                   CUUGACCAAA AU  AAGCCAA  GAUCGA AUACU     C
CAGACAACACUUCUUCCCC^         U  GC       CA      A     GUAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-9-P4d_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUACCUAGCUGUAUGA -23
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Co-mature sequence

Xla-Mir-9-P4d_3p
mirBase accessionNone
Sequence 
37- AUAAAGCUAGACAACCGAACGUA -60
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