MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-9-P2d

Family name MIR-9 (all species)
Seed CUUUGGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xla-Mir-9-P2c  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xla-Mir-9-P4c  Xla-Mir-9-P4d 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Hme-Mir-9-o2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pbv-Mir-9-P2  Pma-Mir-9-o2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Xbo-Mir-9  Xtr-Mir-9-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030725.1: 151615023-151615081 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGUGUGUGUGUGUGGGAAGUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUAUACUGGUUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCCAGAUCGUCAUCUAAGGAA
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Structure
        10          20        30        40        50         
AGUGUGUGUGUGUGUGG--|   UG   G   UC               G     GUAUA 
                   GAAG  GUU UUA  UUUGGUUAUCUAGCU UAUGA     \
                   CUUC  CAA AAU  AAGCCAAUAGAUCGA AUACU     C
AAGGAAUCUACUGCUAGAC^   CU   A   GA               A     UUGGU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-9-P2d_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Co-mature sequence

Xla-Mir-9-P2d_3p
mirBase accessionNone
Sequence 
36- AUAAAGCUAGAUAACCGAAAGUA -59
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