Mir-9-P1a

MirGeneDB ID

Tni-Mir-9-P1a

Family name

MIR-9 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-9-3

Paralogues

Tni-Mir-9-P1b Tni-Mir-9-P2b Tni-Mir-9-P3a Tni-Mir-9-P3b Tni-Mir-9-P4a Tni-Mir-9-P4b

Orthologues

Aca-Mir-9-P1 Agr-Mir-9 Ami-Mir-9-P1 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Cfa-Mir-9-P1 Cin-Mir-9 Cja-Mir-9-P1 Cmi-Mir-9-P1 Cpi-Mir-9-P1 Cpo-Mir-9-P1 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P1 Dre-Mir-9-P1a Eba-Mir-9 Eca-Mir-9-P1 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P1 Gga-Mir-9-P1 Gja-Mir-9-P1 Gmo-Mir-9-P1a Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P1 Isc-Mir-9 Laf-Mir-9-P1 Lan-Mir-9 Lch-Mir-9-P1 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P1 Mal-Mir-9-P1a Mdo-Mir-9-P1 Mml-Mir-9-P1 Mmr-Mir-9-P1 Mmu-Mir-9-P1 Mom-Mir-9 Mun-Mir-9-P1 Npo-Mir-9 Oan-Mir-9-P1 Obi-Mir-9 Ocu-Mir-9-P1 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P1 Pau-Mir-9 Pbv-Mir-9-P1 Pdu-Mir-9 Pma-Mir-9-o1 Pmi-Mir-9 Pve-Mir-9 Rno-Mir-9-P1 Rph-Mir-9 Sha-Mir-9-P1 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P1 Spu-Mir-9 Sto-Mir-9-P1 Tgu-Mir-9-P1 War-Mir-9 Xbo-Mir-9 Xtr-Mir-9-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 5474110-5474171 [+] UCSC Ensembl

Seed

CUUUGGU

Precursor
(pre-Mir +30nt flank)

CGUGUGUGACGUUCAGGAGCUGUGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUAAAUACCUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUCUGUUCCACAACAACAUUUUCAGCU

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Structure

        10           20        30        40        50        60
CGUGUGUGACGUUCAGG---|  UGU       UC               G     GUGUUA 
                    AGC   GUUUCUG  UUUGGUUAUCUAGCU UAUGA      A
                    UUG   UAAAGAU  AAGCCAAUAGAUCGA AUACU      A
UCGACUUUUACAACAACACC^  UC-       GA               A     GUCCAU 
120       110       100         90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-9-P1a_5p

mirBase accession

MIMAT0002911

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Tni-Mir-9-P1a_3p*

mirBase accession

None

Sequence

39- AUAAAGCUAGAUAACCGAAAGUA -62

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