Mir-9-P1

MirGeneDB ID

Ami-Mir-9-P1

Family name

MIR-9 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-9-3

Paralogues

Ami-Mir-9-P2 Ami-Mir-9-P3 Ami-Mir-9-P4

Orthologues

Aca-Mir-9-P1 Agr-Mir-9 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P1 Cfa-Mir-9-P1 Cin-Mir-9 Cja-Mir-9-P1 Cmi-Mir-9-P1 Cpi-Mir-9-P1 Cpo-Mir-9-P1 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P1 Dre-Mir-9-P1a Dre-Mir-9-P1b Eba-Mir-9 Eca-Mir-9-P1 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P1 Gga-Mir-9-P1 Gja-Mir-9-P1 Gmo-Mir-9-P1a Gmo-Mir-9-P1b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P1 Isc-Mir-9 Laf-Mir-9-P1 Lan-Mir-9 Lch-Mir-9-P1 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P1 Mal-Mir-9-P1a Mal-Mir-9-P1b Mdo-Mir-9-P1 Mml-Mir-9-P1 Mmr-Mir-9-P1 Mmu-Mir-9-P1 Mom-Mir-9 Mun-Mir-9-P1 Npo-Mir-9 Oan-Mir-9-P1 Obi-Mir-9 Ocu-Mir-9-P1 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P1 Pau-Mir-9 Pbv-Mir-9-P1 Pdu-Mir-9 Pma-Mir-9-o1 Pmi-Mir-9 Pve-Mir-9 Rno-Mir-9-P1 Rph-Mir-9 Sha-Mir-9-P1 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P1 Spu-Mir-9 Sto-Mir-9-P1 Tgu-Mir-9-P1 Tni-Mir-9-P1a Tni-Mir-9-P1b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P1c Xla-Mir-9-P1d Xtr-Mir-9-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713709.1: 12355229-12355290 [+] UCSC

Seed

CUUUGGU

Precursor
(pre-Mir +30nt flank)

GAGAGCCCGGGAGAAGGAGGGCUGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUCGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCCCACCGGCGUCCUUCGGG

Get precursor sequence

Structure

        10          20        30        40        50        60
GAGAGCCCGGGAGAAGGA--|  CU       UC               G     GUGUUC 
                    GGG  GUUUCUG  UUUGGUUAUCUAGCU UAUGA      U
                    UUC  UAAAGAU  AAGCCAAUAGAUCGA AUACU      C
GGGCUUCCUGCGGCCACCCC^  AG       GA               A     GCCGAG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Ami-Mir-9-P1_5p

mirBase accession

MIMAT0038027

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Star sequence

Ami-Mir-9-P1_3p*

mirBase accession

MIMAT0038028

Sequence

39- AUAAAGCUAGAUAACCGAAAGUA -62

Get sequence