MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-9-P3b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-9-1
Paralogues Tni-Mir-9-P1a  Tni-Mir-9-P1b  Tni-Mir-9-P2b  Tni-Mir-9-P3a  Tni-Mir-9-P4a  Tni-Mir-9-P4b 
Orthologues Ami-Mir-9-P3  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3b  Hme-Mir-9-o3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmu-Mir-9-P3  Mun-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ovu-Mir-9  Pbv-Mir-9-P3  Pma-Mir-9-o3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Xbo-Mir-9  Xtr-Mir-9-P3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
21_random: 1842694-1842755 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P3b)
Mir-10-P3b2 21_random: 1797975-1798033 [+] UCSC Ensembl
Mir-9-P3b 21_random: 1842694-1842755 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGUGCAGGCCAGAGGGGUUGUCUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGACGUACAAUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAAUCCCAUUACAUGUCUGCGAGGAG
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Structure
        10          20         30        40        50        60
GUGUGUGCAGGCCAGAG--|  UUG   -    UC               G     GUGACG 
                   GGG   UCU GUUA  UUUGGUUAUCUAGCU UAUGA      U
                   CCC   AGA CAAU  AAGCCAAUAGAUCGA AUACU      A
GAGGAGCGUCUGUACAUUA^  UA-   A    GA               A     UCUAAC 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-9-P3b_5p

mirBase accessionMIMAT0002911
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Tni-Mir-9-P3b_3p*

mirBase accessionNone
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
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