MirGeneDB ID | Xtr-Mir-9-P3 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-9a-1
|
Paralogues |
Xtr-Mir-9-P1
Xtr-Mir-9-P2
Xtr-Mir-9-P4
|
Orthologues |
Ami-Mir-9-P3
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P3
Cfa-Mir-9-P3
Cin-Mir-9
Cli-Mir-9-P3
Cpi-Mir-9-P3
Cpo-Mir-9-P3
Cte-Mir-9
Dno-Mir-9-P3
Dre-Mir-9-P3a
Esc-Mir-9
Ete-Mir-9-P3
Gga-Mir-9-P3
Gja-Mir-9-P3
Gmo-Mir-9-P3a
Gmo-Mir-9-P3b
Hme-Mir-9-o3
Hsa-Mir-9-P3
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P3
Lgi-Mir-9
Loc-Mir-9-P3
Mal-Mir-9-P3a
Mal-Mir-9-P3b
Mdo-Mir-9-P3
Mml-Mir-9-P3
Mmu-Mir-9-P3
Mun-Mir-9-P3
Npo-Mir-9
Oan-Mir-9-P3-v1
Oan-Mir-9-P3-v2
Obi-Mir-9
Ocu-Mir-9-P3
Ovu-Mir-9
Pbv-Mir-9-P3
Pma-Mir-9-o3
Pmi-Mir-9
Rno-Mir-9-P3
Sha-Mir-9-P3
Spt-Mir-9-P3
Spu-Mir-9
Tgu-Mir-9-P3
Tni-Mir-9-P3a
Tni-Mir-9-P3b
Xbo-Mir-9
Xla-Mir-9-P3c
Xla-Mir-9-P3d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (xenTro9_add) |
chr8: 111349809-111349870 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGGUGGGAUGAACAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUGUCAAUCCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUUACACUCCUUGGCGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGGUGGGAUGAACAG---| GUUG UC G GUGUUG
GGGUUG UUA UUUGGUUAUCUAGCU UAUGA U
CCCAAU AAU AAGCCAAUAGAUCGA AUACU C
GUCGCGGUUCCUCACAUUAC^ AAA- GA A UCCUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-9-P3_5p |
mirBase accession | MIMAT0003553 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-9a-5p
|
Star sequence |
Xtr-Mir-9-P3_3p* |
mirBase accession | MIMAT0003554 |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-9a-3p
|