MirGeneDB

MirGeneDB ID

Dre-Mir-9-P3a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-9-6
Paralogues Dre-Mir-9-P1  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Dre-Mir-9-P3b  Dre-Mir-9-P4a  Dre-Mir-9-P4b 
Orthologues Aca-Mir-9-P3  Ami-Mir-9-P3  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Ete-Mir-9-P3  Gga-Mir-9-P3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmu-Mir-9-P3  Oan-Mir-9-P3  Ocu-Mir-9-P3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spu-Mir-9  Sto-Mir-9-P3  Tgu-Mir-9-P3  Xtr-Mir-9-P3 
Node of Origin (locus) D. rerio
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr7: 14379556-14379617 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAAAAGUUUUGACAGGAGGUAGUUGCUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUAUCUGCCUUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGUCCUCCUUAACUGCAUACAAGUUG
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Structure
        10          20        30        40        50        60
CAAAAAAGUUUUGACAG--|   UA   G   UC               G     GUGUUU 
                   GAGG  GUU CUA  UUUGGUUAUCUAGCU UAUGA      A
                   CUCC  UAA GAU  AAGCCAAUAGAUCGA AUACU      U
GUUGAACAUACGUCAAUUC^   UG   A   GA               A     UCCGUC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-9-P3a_5p

MirBase accessionMIMAT0001769
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Validated targets TargetScanFish: dre-miR-9
Star sequence

Dre-Mir-9-P3a_3p*

MirBase accessionMIMAT0003156
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
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