MirGeneDB

MirGeneDB ID

Cpo-Mir-9-P3

Family name MIR-9 (all species)
Seed CUUUGGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-9-3
Paralogues Cpo-Mir-9-P1  Cpo-Mir-9-P2 
Orthologues Aca-Mir-9-P3  Ami-Mir-9-P3  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cpi-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Dre-Mir-9-P3b  Ete-Mir-9-P3  Gga-Mir-9-P3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmu-Mir-9-P3  Oan-Mir-9-P3  Ocu-Mir-9-P3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spu-Mir-9  Sto-Mir-9-P3  Tgu-Mir-9-P3  Xtr-Mir-9-P3 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_10: 34662884-34662944 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCGGCGGCGGCGAAGGGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGCCACAGAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUCUCACAACUUCUGCGUGCGA
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Structure
        10         20         30        40        50        60
GCGGCGGCGGCGAAGGG-   CC       -| C               G     GUGCCA 
                  AGG  CGUUUCU CU UUUGGUUAUCUAGCU UAUGA      C
                  UCU  GUAAAGA GA AAGCCAAUAGAUCGA AUACU      A
AGCGUGCGUCUUCAACAC   CA       U^ -               A     GCCGAG 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Cpo-Mir-9-P3_5p

MirBase accessionMIMAT0046843
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Cpo-Mir-9-P3_3p*

MirBase accessionMIMAT0046844
Sequence
40- UAAAGCUAGAUAACCGAAAGU -61
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