Mir-9-P2b

MirGeneDB ID

Tni-Mir-9-P2b

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-9-2

Paralogues

Tni-Mir-9-P1a Tni-Mir-9-P1b Tni-Mir-9-P3a Tni-Mir-9-P3b Tni-Mir-9-P4a Tni-Mir-9-P4b

Orthologues

Aca-Mir-9-P2 Ami-Mir-9-P2 Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P2 Cfa-Mir-9-P2 Cin-Mir-9 Cli-Mir-9-P2 Cmi-Mir-9-P2 Cpi-Mir-9-P2 Cpo-Mir-9-P2 Cte-Mir-9 Dno-Mir-9-P2 Dre-Mir-9-P2b Esc-Mir-9 Ete-Mir-9-P2 Gga-Mir-9-P2 Gja-Mir-9-P2 Gmo-Mir-9-P2b Hme-Mir-9-o2 Hsa-Mir-9-P2 Isc-Mir-9 Lan-Mir-9 Lch-Mir-9-P2 Lgi-Mir-9 Loc-Mir-9-P2 Mal-Mir-9-P2b Mdo-Mir-9-P2 Mml-Mir-9-P2 Mmu-Mir-9-P2 Mun-Mir-9-P2 Npo-Mir-9 Oan-Mir-9-P2 Obi-Mir-9 Ocu-Mir-9-P2 Ovu-Mir-9 Pbv-Mir-9-P2 Pma-Mir-9-o2 Pmi-Mir-9 Rno-Mir-9-P2 Sha-Mir-9-P2 Spt-Mir-9-P2 Spu-Mir-9 Sto-Mir-9-P2 Tgu-Mir-9-P2 Xbo-Mir-9 Xtr-Mir-9-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

12: 2246027-2246086 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACAGCCUUUGAAUGAGAAGUGUGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUGCUCGUCAUAAAGCUAGAUAACCGAAAGUAAAAACGACUUCCAGACUCGCCGAGGACCCU

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Structure

        10           20        30        40        50         
UACAGCCUUUGAAUGAG---|   G    G   UC               G     GUGUU 
                    AAGU UGUU UUA  UUUGGUUAUCUAGCU UAUGA     C
                    UUCA GCAA AAU  AAGCCAAUAGAUCGA AUACU     U
UCCCAGGAGCCGCUCAGACC^   -    A   GA               A     GCUCG 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-9-P2b_5p

mirBase accession

MIMAT0002911

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Star sequence

Tni-Mir-9-P2b_3p*

mirBase accession

None

Sequence

37- AUAAAGCUAGAUAACCGAAAGUA -60

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