MirGeneDB ID | Ebu-Mir-9-P7 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-9-P5
Ebu-Mir-9-P6
Ebu-Mir-9-P8
|
Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Tca-Mir-9-o7
Xbo-Mir-9
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02010532.1: 2409350-2409409 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACGGCGCAAGGGAGCUGAGCCGGCUGCUGUCUUUGGUUAUCUAGCUGUAUGAGAGCUCUGGUCGUCAUAAAGCUAGAUAACCGAAGGUAGGAGCCUAGUUCUGCUGCAUCUCCACUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GACGGCGCAAGGGAGCU- C-| G GU G GAGCU
GAGC GGCU CU CUUUGGUUAUCUAGCU UAUGA C
CUUG CCGA GA GAAGCCAAUAGAUCGA AUACU U
AGGUCACCUCUACGUCGU AU^ G UG A GCUGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-9-P7_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Ebu-Mir-9-P7_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGAUAACCGAAGGUA -60
Get sequence
|