Mir-9-P6

MirGeneDB ID

Ebu-Mir-9-P6

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-9-P5 Ebu-Mir-9-P7 Ebu-Mir-9-P8

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Tca-Mir-9-o6 Xbo-Mir-9

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02009664.1: 200543-200602 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGAAGAUUGAGGUUGGAUUCCUGAUUUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUCAGGCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACGGUUUCCCUUAUUCAUCCUUUGACA

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Structure

        10        20          30        40        50         
AUGAAGAUUGAGGUUGGAUUC--|  A     UC               G     GUGUU 
                       CUG UUUUA  UUUGGUUAUCUAGCU UAUGA     U
                       GGC AAAAU  AAGCCAAUAGAUCGA AUACU     C
ACAGUUUCCUACUUAUUCCCUUU^  A     GA               A     UCGGA 
.       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Ebu-Mir-9-P6_5p

mirBase accession

None

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Star sequence

Ebu-Mir-9-P6_3p*

mirBase accession

None

Sequence

37- AUAAAGCUAGAUAACCGAAAGUA -60

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