MirGeneDB 2.1

MirGeneDB ID

Pfl-Mir-9-v1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-9-v2 
Orthologues Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Sko-Mir-9-v1  Spu-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD344854.1: 129993-130052 [+]
Precursor
(pre-Mir +30nt flank)
GGUGCACCGACAAGUCUGGCGCUCGUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUAGACAUUAUAAAGCUAGGUUACCAAAGACAAAAACAGAUGCCGUAAUUCAACUGAACACU
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Structure
        10         20         30         40        50         
GGUGCACCGACAAGUCU-    -| C     C-        U        G     GUGUU 
                  GGCG CU GUUUU  UCUUUGGU AUCUAGCU UAUGA     C
                  CCGU GA CAAAA  AGAAACCA UGGAUCGA AUAUU     U
UCACAAGUCAACUUAAUG    A^ -     AC        U        A     ACAGA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Mature sequence

Pfl-Mir-9-v1_5p

mirBase accessionNone
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Co-mature sequence

Pfl-Mir-9-v1_3p

mirBase accessionNone
Sequence
37- AUAAAGCUAGGUUACCAAAGACA -60
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