MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-9-P13

Family name MIR-9 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-9-P10  Bge-Mir-9-P11  Bge-Mir-9-P12-v1 
Orthologues Aae-Mir-9-P13  Aga-Mir-9-P13  Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P13  Dgr-Mir-9  Dlo-Mir-9-P13  Dme-Mir-9-P13  Dmo-Mir-9-P13  Dsi-Mir-9-P13  Dya-Mir-9-P13  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P13  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)		 KZ614731.1: 666805-666865 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P13)		 Mir-9-P13 KZ614731.1: 666805-666865 [-] Ensembl
Mir-9-P12-v1 KZ614731.1: 668640-668700 [-] Ensembl
Mir-9-P12-v2 KZ614731.1: 668641-668699 [-] Ensembl
Mir-306 KZ614731.1: 668749-668804 [-] Ensembl
Mir-9-P11 KZ614731.1: 672851-672910 [-] Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
AGAAAAAUAGAAGAUGGUGCUGUUGUCCUCUCUUUGGUGAUCUAGCUGUAUGAGUGUAAAACGACAUCAUAAAGCUAGAUUACCGAAGUCAGGAAAACAGUAUAUUCAACUGAUUUACUUU
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Structure
        10          20        30        40        50          
AGAAAAAUAGAAGAUGG--|      G    CU                G     GUGUAA 
                   UGCUGUU UCCU  CUUUGGUGAUCUAGCU UAUGA      \
                   AUGACAA AGGA  GAAGCCAUUAGAUCGA AUACU      A
UUUCAUUUAGUCAACUUAU^      A    CU                A     ACAGCA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-9-P13_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUGAUCUAGCUGUAUGA -23
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Star sequence

Bge-Mir-9-P13_3p*
mirBase accessionNone
Sequence 
38- AUAAAGCUAGAUUACCGAAGUCA -61
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