MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-9-P12

Family name MIR-9 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-9-P10  Bge-Mir-9-P11  Bge-Mir-9-P12-v1  Bge-Mir-9-P13 
Orthologues Aae-Mir-9-P12-v1  Aga-Mir-9-P12  Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P12-v1  Dgr-Mir-9  Dlo-Mir-9-P12-v1  Dme-Mir-9-P12-v1  Dmo-Mir-9-P12-v1  Dsi-Mir-9-P12-v1  Dya-Mir-9-P12-v1  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P12-v1  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P12  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P12  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)		 KZ614731.1: 668641-668699 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P12-v2)		 Mir-9-P13 KZ614731.1: 666805-666865 [-] Ensembl
Mir-9-P12-v1 KZ614731.1: 668640-668700 [-] Ensembl
Mir-9-P12-v2 KZ614731.1: 668641-668699 [-] Ensembl
Mir-306 KZ614731.1: 668749-668804 [-] Ensembl
Mir-9-P11 KZ614731.1: 672851-672910 [-] Ensembl
Variant

Bge-Mir-9-P12-v2
Seed UUUGGUG
Precursor
(pre-Mir +30nt flank)		 
CGUAGUUAGCAAGAGCAGCAUUUGUCUCUUCUUUGGUGAUGUAGCUGUAUGAUUGCUGUAGAAGGUCAUAAAGCUAGAUUACCAAAGCAGAGACAUUGGCUAAAUCAACGAACUGACUU
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Structure
        10          20        30        40        50         
CGUAGUUAGCAAGAGCA--| AUU       U          G     G      UGCUG 
                   GC   UGUCUCU CUUUGGUGAU UAGCU UAUGAU     \
                   CG   ACAGAGA GAAACCAUUA AUCGA AUACUG     U
UUCAGUCAAGCAACUAAAU^ GUU       C          G     A      GAAGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-9-P12-v2_5p
mirBase accessionNone
Sequence 
0- CUUUGGUGAUGUAGCUGUAUGAU -23
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Co-mature sequence

Bge-Mir-9-P12-v2_3p
mirBase accessionNone
Sequence 
37- AUAAAGCUAGAUUACCAAAGCA -59
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Variant

Bge-Mir-9-P12-v1
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
GCGUAGUUAGCAAGAGCAGCAUUUGUCUCUUCUUUGGUGAUGUAGCUGUAUGAUUGCUGUAGAAGGUCAUAAAGCUAGAUUACCAAAGCAGAGACAUUGGCUAAAUCAACGAACUGACUUC
Get precursor sequence
Structure
        10          20        30        40        50          
GCGUAGUUAGCAAGAGC--|  AUU       U          G     G     UUGCUG 
                   AGC   UGUCUCU CUUUGGUGAU UAGCU UAUGA      \
                   UCG   ACAGAGA GAAACCAUUA AUCGA AUACU      U
CUUCAGUCAAGCAACUAAA^  GUU       C          G     A     GGAAGA 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-9-P12-v1_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUGAUGUAGCUGUAUGA -23
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Star sequence

Bge-Mir-9-P12-v1_3p*
mirBase accessionNone
Sequence 
39- UAAAGCUAGAUUACCAAAGCAG -61
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