MirGeneDB 2.1

MirGeneDB ID

Dan-Mir-9-P13

Family name MIR-9 (all species)
Seed CUUUGGU
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-9b
Paralogues Dan-Mir-9-P9  Dan-Mir-9-P10  Dan-Mir-9-P11  Dan-Mir-9-P12-v1  Dan-Mir-9-P12-v2 
Orthologues Aae-Mir-9-P13  Bfl-Mir-9  Bge-Mir-9-o13  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dme-Mir-9-P13  Dmo-Mir-9-P13  Dsi-Mir-9-P13  Dya-Mir-9-P13  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Spu-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Diptera
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_12916: 15864555-15864614 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P13)
Mir-9-P13 scaffold_12916: 15864555-15864614 [-] Ensembl
Mir-9-P12-v1 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-9-P12-v2 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-306 scaffold_12916: 15864875-15864933 [-] Ensembl
Mir-9-P11 scaffold_12916: 15865484-15865553 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUUGCUCUUUUGUUUGCACAUUAUUUGUUCUUUGGUGAUUUUAGCUGUAUGGUGUCUCAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUUUGCAUUUUUUCUGAGUUGCU
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Structure
        10        20          30        40        50          
GAGUUGCUCUUUUGUUUGCAC--|       UUC         UUU    G    GUGUCU 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG      \
                       UGGUAAAC   AAACCAUUA   UCGA AUAC      C
UCGUUGAGUCUUUUUUACGUUUU^       CAA         UU-    G    CUUAUA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Da
Mature sequence

Dan-Mir-9-P13_5p

mirBase accessionMIMAT0008416
Sequence
0- UCUUUGGUGAUUUUAGCUGUAUG -23
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Star sequence

Dan-Mir-9-P13_3p*

mirBase accessionNone
Sequence
38- UAGAGCUUUAUUACCAAAAACC -60
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