| MirGeneDB ID | Dya-Mir-965 |
|---|
| Family name |
MIR-965 (all species) |
|---|
| Seed |
AAGCGUA |
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| Species |
Fruit fly (Drosophila yakuba) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-965
Bge-Mir-965
Dan-Mir-965
Dma-Mir-965
Dme-Mir-965
Dmo-Mir-965
Dpu-Mir-965
Dsi-Mir-965
Hme-Mir-965
Tca-Mir-965
|
|---|
| Node of Origin (locus) |
Pancrustacea
|
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| Node of Origin (family) |
Pancrustacea
|
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Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 236075-236137 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACCAUCUGACAAAAUUGCUCAACAUUUUAGGGGGUUAAACUGUACGUUAUAUGUGCCCUUUUGUAAAUUCAUAAGCGUAUAGCUUUUCCCCUUAAAAGUUGAAGCAACAGCAACAAAUAGUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACCAUCUGACAAAAUUGC---| A UU A A UGCCCUU
UCAAC UUUUAGGGGG AA CUGUACGUU UAUG U
AGUUG AAAAUUCCCC UU GAUAUGCGA AUAC U
UGUGAUAAACAACGACAACGA^ - UU C - UUAAAUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dya-Mir-965_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGUUAAACUGUACGUUAUAUG -23
Get sequence
|
|---|
| Mature sequence |
Dya-Mir-965_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAAGCGUAUAGCUUUUCCCCUU -63
Get sequence
|
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