MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-965

Family name MIR-965 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-965  Aga-Mir-965  Bge-Mir-965  Dan-Mir-965  Dlo-Mir-965  Dme-Mir-965  Dmo-Mir-965  Dpu-Mir-965  Dsi-Mir-965  Dya-Mir-965  Gpa-Mir-965  Hme-Mir-965  Tca-Mir-965 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(DMA_ASM399081)		 NC_046175.1: 6247768-6247831 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-965)		 Mir-965 NC_046175.1: 6247768-6247831 [-] Ensembl
Mir-36 NC_046175.1: 6285796-6285856 [-] Ensembl
Mir-279-P1d NC_046175.1: 6285937-6286000 [-] Ensembl
Mir-12608 NC_046175.1: 6286446-6286507 [-] Ensembl
Mir-29-P2 NC_046175.1: 6286592-6286666 [-] Ensembl
Mir-2-P5 NC_046175.1: 6286723-6286816 [-] Ensembl
Mir-9-P9 NC_046175.1: 6286883-6286941 [-] Ensembl
Mir-279-P1c NC_046175.1: 6287015-6287090 [-] Ensembl
Seed AAGCGUA
Precursor
(pre-Mir +30nt flank)		 
UAAUGCGAAGAAGCGUGCAAGGGCAAAGCAAGGGAAAGGUUAUAGCUCUUAUGUGUCUUAUUUUGAUUACCAUAAGCGUAUGGCUUUUCCCCUGCAAUGUCACUUGAUGAGAACUGCUUACAGC
Get precursor sequence
Structure
        10         20         30        40        50        60  
UAAUGCGAAGAAGCGUG-    -|   AA   A             G U      UGUCUUAU 
                  CAAG GGCA  GCA GGGAAAGGUUAUA C CUUAUG        \
                  GUUC CUGU  CGU CCCUUUUCGGUAU G GAAUAC        U
CGACAUUCGUCAAGAGUA    A^   AA   C             - C      CAUUAGUU 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-965_5p*
mirBase accessionNone
Sequence 
0- AGGGAAAGGUUAUAGCUCUUAUG -23
Get sequence
Mature sequence

Dma-Mir-965_3p
mirBase accessionNone
Sequence 
42- UAAGCGUAUGGCUUUUCCCCUG -64
Get sequence