Mir-279-P1c

MirGeneDB ID

Dma-Mir-279-P1c

Family name

MIR-279 (all species)

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-279-o8 Dma-Mir-279-o9 Dma-Mir-279-P1d Dma-Mir-279-P2 Dma-Mir-279-P3

Orthologues

Agr-Mir-279 Bko-Mir-279-o1 Bpl-Mir-279 Dan-Mir-279-P1 Dlo-Mir-279-P1 Dme-Mir-279-P1 Dmo-Mir-279-P1 Dpu-Mir-279-P1c Dsi-Mir-279-P1 Dya-Mir-279-P1 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P1 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-o1 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 Tca-Mir-279-P1c

Node of Origin (locus)

Daphnia

Node of Origin (family)

Protostomia

Genome context
(DMA_ASM399081)

NC_046175.1: 6287015-6287090 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P1c)

Mir-965 NC_046175.1: 6247768-6247831 [-] Ensembl
Mir-36 NC_046175.1: 6285796-6285856 [-] Ensembl
Mir-279-P1d NC_046175.1: 6285937-6286000 [-] Ensembl
Mir-12608 NC_046175.1: 6286446-6286507 [-] Ensembl
Mir-29-P2 NC_046175.1: 6286592-6286666 [-] Ensembl
Mir-2-P5 NC_046175.1: 6286723-6286816 [-] Ensembl
Mir-9-P9 NC_046175.1: 6286883-6286941 [-] Ensembl
Mir-279-P1c NC_046175.1: 6287015-6287090 [-] Ensembl

Seed

GACUAGA

Precursor
(pre-Mir +30nt flank)

UUUCAGUCCACAUCUAUGGUGGAUUUCGUUGAUGAGUGAGGAUCGUUAGUCGCGUUGAAAACGUUCCUCAAGUUAAGAGUUCGUGACUAGAUCUGACACUCGUCCACGACGUUGACUCUGUACAUCAGUGAUUUGC

Get precursor sequence

Structure

        10          20        30         40        50        60        
UUUCAGUCCACAUCUAU--   G   U    U        A-|    GU        UUGAAAACGUUCC 
                   GGU GAU UCGU GAUGAGUG  GGAUC  UAGUCGCG             \
                   UCA UUG AGCA CUGCUCAC  UCUAG  AUCAGUGC             U
CGUUUAGUGACUACAUGUC   G   C    C        AG^    --        UUGAGAAUUGAAC 
    130       120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Star sequence

Dma-Mir-279-P1c_5p*

mirBase accession

None

Sequence

0- GAUGAGUGAGGAUCGUUAGUCGCG -24

Get sequence

Mature sequence

Dma-Mir-279-P1c_3p

mirBase accession

None

Sequence

53- UGACUAGAUCUGACACUCGUCCA -76

Get sequence