Mir-279

MirGeneDB ID

Gsp-Mir-279

Family name

MIR-279 (all species)

Species

Montseny horsehair worm (Gordionus sp.)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-279-P1a Aae-Mir-279-P1b1 Aae-Mir-279-P1b2 Aae-Mir-279-P2 Aae-Mir-279-P3 Aae-Mir-279-P25 Aga-Mir-279-P1a Aga-Mir-279-P1b Aga-Mir-279-P2 Aga-Mir-279-P3 Aga-Mir-279-P25 Agr-Mir-279 Asu-Mir-279-o22 Asu-Mir-279-o23 Asu-Mir-279-o24 Asu-Mir-279-o25 Asu-Mir-279-o26 Ava-Mir-279-P21a Ava-Mir-279-P21b Ava-Mir-279-P22a Ava-Mir-279-P22b Ava-Mir-279-P23a Ava-Mir-279-P23b Ava-Mir-279-P24a Ava-Mir-279-P24b Bge-Mir-279-o5 Bge-Mir-279-o6 Bge-Mir-279-o7 Bge-Mir-279-P2 Bge-Mir-279-P3 Bko-Mir-279-o1 Bko-Mir-279-o2 Bpl-Mir-279 Cbr-Mir-279-P10 Cbr-Mir-279-P11a Cbr-Mir-279-P11b Cbr-Mir-279-P12 Cbr-Mir-279-P13 Cel-Mir-279-P10 Cel-Mir-279-P11 Cel-Mir-279-P12 Cel-Mir-279-P13 Csc-Mir-279-P9a Csc-Mir-279-P9b Cte-Mir-279-o34 Cte-Mir-279-o35 Cte-Mir-279-o36 Dan-Mir-279-P1 Dan-Mir-279-P2 Dan-Mir-279-P3 Dgr-Mir-279-o48 Dgr-Mir-279-o49 Dlo-Mir-279-o4 Dlo-Mir-279-P1 Dlo-Mir-279-P2 Dlo-Mir-279-P3 Dma-Mir-279-o8 Dma-Mir-279-o9 Dma-Mir-279-P1c Dma-Mir-279-P1d Dma-Mir-279-P2 Dma-Mir-279-P3 Dme-Mir-279-P1 Dme-Mir-279-P2 Dme-Mir-279-P3 Dmo-Mir-279-P1 Dmo-Mir-279-P2 Dmo-Mir-279-P3 Dpu-Mir-279-o8 Dpu-Mir-279-o9 Dpu-Mir-279-P1c Dpu-Mir-279-P1d Dpu-Mir-279-P2 Dpu-Mir-279-P3 Dsi-Mir-279-P1 Dsi-Mir-279-P2 Dsi-Mir-279-P3 Dya-Mir-279-P1 Dya-Mir-279-P2 Dya-Mir-279-P3 Eba-Mir-279 Efe-Mir-279-o37 Efe-Mir-279-o38 Efe-Mir-279-o39 Efe-Mir-279-o40 Efe-Mir-279-o41 Efe-Mir-279-o42 Efe-Mir-279-o43 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P1 Gpa-Mir-279-P2 Gpa-Mir-279-P3 Gsa-Mir-279 Hme-Mir-279-o1 Hme-Mir-279-o2 Hme-Mir-279-P2 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lan-Mir-279-P17 Lan-Mir-279-P18 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Lpo-Mir-279-P4 Lpo-Mir-279-P5 Lpo-Mir-279-P6 Lpo-Mir-279-P7 Lpo-Mir-279-P8 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ofu-Mir-279-o53 Ofu-Mir-279-o54 Ofu-Mir-279-o55 Ofu-Mir-279-o56 Ofu-Mir-279-o57 Ovu-Mir-279 Pau-Mir-279 Pca-Mir-279-o27 Pca-Mir-279-o28 Pca-Mir-279-o29 Pca-Mir-279-o30 Pca-Mir-279-o31 Pca-Mir-279-o32 Pca-Mir-279-o33 Pcr-Mir-279 Pdu-Mir-279-o44 Pdu-Mir-279-o45 Pdu-Mir-279-o46 Pdu-Mir-279-o47 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sme-Mir-279-P19 Sme-Mir-279-P20 Sne-Mir-279 Snu-Mir-279-o50 Snu-Mir-279-o51 Snu-Mir-279-o52 Tca-Mir-279-o3 Tca-Mir-279-P1c Tca-Mir-279-P1d Tca-Mir-279-P2 Tca-Mir-279-P3 Tur-Mir-279-P26 Tur-Mir-279-P27a Tur-Mir-279-P27b War-Mir-279-P14 War-Mir-279-P15 War-Mir-279-P16

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_954871325.1_tfGorGonz1-WG_genomic)

OX940786.1: 10640023-10640092 [+]

Clustered miRNAs
(< 50kb from Mir-279)

Mir-279 OX940786.1: 10640023-10640092 [+]
Mir-36 OX940786.1: 10640159-10640238 [+]

Seed

GACUAGA

Precursor
(pre-Mir +30nt flank)

CUCCAACUACAAAUACAGAGUUCUAUGAGUGAUGUUUGUGUUUCUAGUGCCAUGUGUAAUAUUAAAAAGAAAUAAUCAUGACUAGAUCCACACUCAUCCCUUAUGGGAUCUCGAUAAUAUUUUCUUCUUU

Get precursor sequence

Structure

        10         20         30        40        50        60     
CUCCAACUACAAAUACA-   -|        U    UU    UU      GC    UGUAAUAUUA 
                  GAG UUCUAUGAG GAUG  UGUG  UCUAGU  CAUG          A
                  CUC AGGGUAUUC CUAC  ACAC  AGAUCA  GUAC          A
UUUCUUCUUUUAUAAUAG   U^        C    UC    CU      --    UAAUAAAGAA 
.       120       110       100        90          80        70

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.

3' NTU

Motifs

UGUG in loop

Tissue expression

Wh	Wh

Star sequence

Gsp-Mir-279_5p*

mirBase accession

None

Sequence

0- GAUGUUUGUGUUUCUAGUGCCAUG -24

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Mature sequence

Gsp-Mir-279_3p

mirBase accession

None

Sequence

48- UGACUAGAUCCACACUCAUCCC -70

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