MirGeneDB 2.1
MirGeneDB ID

Dsi-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-286
Paralogues Dsi-Mir-279-P1  Dsi-Mir-279-P3 
Orthologues Aae-Mir-279-P2a  Aae-Mir-279-P2b1  Aae-Mir-279-P2b2  Bpl-Mir-279  Cgi-Mir-279  Dan-Mir-279-P2  Dma-Mir-279-o2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-o2  Dya-Mir-279-P2  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Diptera
Node of Origin (family) Protostomia
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2R: 16151283-16151358 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P2 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P1 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P2 2R: 16151557-16151615 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUGGGCACUCCAGUUUUAAAAUUGAAUGGCGAAUGUCGGUAUGGUCUCUUUUUCCAAAGAAAGGUUUCGAUCAAGCGAAGUGACUAGACCGAACACUCGUGCUAUAAUUUUAAAAUAUUCAACAUGCUCAGUG
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Structure
        10          20        30         40        50        60       
AUAUUGGGCACUCCAGU--          AAUG    A  -|    A     U  UUUUCCAAAGAAAG 
                   UUUAAAAUUG    GCGA UG UCGGU UGGUC CU              \
                   AAAUUUUAAU    UGCU AC AGCCA AUCAG GA              G
GUGACUCGUACAACUUAUA          AUCG    C  A^    G     U  AGCGAACUAGCUUU 
    130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Wh
Star sequence

Dsi-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- GGCGAAUGUCGGUAUGGUCUCU -22
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Mature sequence

Dsi-Mir-279-P2_3p
mirBase accessionMIMAT0008859
Sequence 
53- UGACUAGACCGAACACUCGUGCU -76
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