MirGeneDB 2.1
MirGeneDB ID

Esc-Mir-279

Family name MIR-279 (all species)
Seed GACUAGA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-279-o26  Aae-Mir-279-P1  Aae-Mir-279-P2a  Aae-Mir-279-P2b1  Aae-Mir-279-P2b2  Aae-Mir-279-P3  Asu-Mir-279-o26  Asu-Mir-279-o27  Asu-Mir-279-o28  Asu-Mir-279-o29  Asu-Mir-279-o30  Bge-Mir-279-o35  Bge-Mir-279-o36  Bge-Mir-279-o37  Bge-Mir-279-o38  Bge-Mir-279-o39  Bpl-Mir-279  Cbr-Mir-279-o7  Cbr-Mir-279-o8a  Cbr-Mir-279-o8b  Cbr-Mir-279-o9  Cbr-Mir-279-o10  Cel-Mir-279-o7  Cel-Mir-279-o8  Cel-Mir-279-o9  Cel-Mir-279-o10  Cgi-Mir-279  Csc-Mir-279-P14a  Csc-Mir-279-P14b  Cte-Mir-279-o11  Cte-Mir-279-o12  Cte-Mir-279-o13  Dan-Mir-279-P1  Dan-Mir-279-P2  Dan-Mir-279-P3  Dma-Mir-279-o1  Dma-Mir-279-o2  Dma-Mir-279-o3  Dma-Mir-279-o4  Dma-Mir-279-o5  Dma-Mir-279-o6  Dme-Mir-279-P1  Dme-Mir-279-P2  Dme-Mir-279-P3  Dmo-Mir-279-P1  Dmo-Mir-279-P2  Dmo-Mir-279-P3  Dpu-Mir-279-o1  Dpu-Mir-279-o2  Dpu-Mir-279-o3  Dpu-Mir-279-o4  Dpu-Mir-279-o5  Dpu-Mir-279-o6  Dsi-Mir-279-P1  Dsi-Mir-279-P2  Dsi-Mir-279-P3  Dya-Mir-279-P1  Dya-Mir-279-P2  Dya-Mir-279-P3  Efe-Mir-279-o14  Efe-Mir-279-o15  Efe-Mir-279-o16  Efe-Mir-279-o17  Efe-Mir-279-o18  Efe-Mir-279-o19  Efe-Mir-279-o20  Hme-Mir-279-o31  Hme-Mir-279-o32  Hme-Mir-279-o33  Hme-Mir-279-o34  Isc-Mir-279  Lan-Mir-279-o40  Lan-Mir-279-o41  Lgi-Mir-279  Lpo-Mir-279-P9  Lpo-Mir-279-P10  Lpo-Mir-279-P11  Lpo-Mir-279-P12  Lpo-Mir-279-P13  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Sme-Mir-279-P4  Sme-Mir-279-P5  Tca-Mir-279-o21  Tca-Mir-279-o22  Tca-Mir-279-o23  Tca-Mir-279-o24  Tca-Mir-279-o25 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_004765925.1_miRNA_LOCI)		 Esc-Mir-279_pre_SRIE01038885.1:207140-207401: 101-162 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCAUCGUCGUAGUGCGGUUUCUCCAGCGUGGUUGAAUUUGCUUCUGGUCCAUGUAGACACCGCUUCAUGACUAGAUCAAACUCAUCCACCCUGAAGAAUCCCUAUCGUCAUACCUCUGAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
CGUCAUCGUCGUAGUGC--| U    C   C    U   A    CU       C   UAGAC 
                   GG UUCU CAG GUGG UGA UUUG  UCUGGUC AUG     A
                   CC AAGA GUC CACC ACU AAAC  AGAUCAG UAC     C
CAGUCUCCAUACUGCUAUC^ U    A   C    U   C    U-       -   UUCGC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ce Li
Star sequence

Esc-Mir-279_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUUGAAUUUGCUUCUGGUCCAUG -25
Get sequence
Mature sequence

Esc-Mir-279_3p
mirBase accessionNone
Sequence 
39- UGACUAGAUCAAACUCAUCCACC -62
Get sequence