MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-279-P21a

Family name MIR-279 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-279-P21b  Ava-Mir-279-P22a  Ava-Mir-279-P22b  Ava-Mir-279-P23a  Ava-Mir-279-P23b  Ava-Mir-279-P24a  Ava-Mir-279-P24b 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075496.1: 5842529-5842590 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P21a)		 Mir-31 CP075496.1: 5796042-5796106 [+] Ensembl
Mir-36-P28b CP075496.1: 5842105-5842163 [-] Ensembl
Mir-36-P26b CP075496.1: 5842400-5842464 [-] Ensembl
Mir-279-P21a CP075496.1: 5842529-5842590 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
AUCUUUGAAGAGAAGAGCUCUCCGAUUCAUAUGAUUGUGUUAUUUAGUCUAUGUGGUUUUUGCAAGUUCAUGACUAGAUCUCACACUCAUCCUAAUUGAGAGCACCUUCACUUGAUAUAUUA
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Structure
        10           20        30        40        50        60 
AUCUUUGAAGAGAAGAG---|    C    CAU    U    UU        U   UGGUUUU 
                    CUCUC GAUU   AUGA UGUG  AUUUAGUC AUG       \
                    GAGAG UUAA   UACU ACAC  UAGAUCAG UAC       U
AUUAUAUAGUUCACUUCCAC^    -    UCC    C    UC        -   UUGAACG 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To To
Star sequence

Ava-Mir-279-P21a_5p*
mirBase accessionNone
Sequence 
0- AUGAUUGUGUUAUUUAGUCUAUG -23
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Mature sequence

Ava-Mir-279-P21a_3p
mirBase accessionNone
Sequence 
40- UGACUAGAUCUCACACUCAUCC -62
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