MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-36-P28b

Family name MIR-36 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-36-P26a  Ava-Mir-36-P26b  Ava-Mir-36-P27  Ava-Mir-36-P28a  Ava-Mir-36-P29a  Ava-Mir-36-P29b 
Orthologues Agr-Mir-36  Asu-Mir-36-o28  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075496.1: 5842105-5842163 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P28b)		 Mir-31 CP075496.1: 5796042-5796106 [+] Ensembl
Mir-36-P28b CP075496.1: 5842105-5842163 [-] Ensembl
Mir-36-P26b CP075496.1: 5842400-5842464 [-] Ensembl
Mir-279-P21a CP075496.1: 5842529-5842590 [-] Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
ACGAGCCGGAGAGUUUGAUUAUGUUUGUAGGAAGAUUGUUUAAACGGUCACUUCGAUUUUAAUACAGUCACCGGGUACACACUCUUCCUUUUUCUGGCUCCUAUUUGUCGUUUAUUGGA
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Structure
        10        20           30        40        50         
ACGAGCCGGAGAGUUUGAUUAU   UGU---|      U   U  AA    C   UCGAUU 
                      GUU      AGGAAGA UGU UA  CGGU ACU      \
                      CGG      UCCUUCU ACA AU  GCCA UGA      U
AGGUUAUUUGCUGUUUAUCCU-   UCUUUU^      C   C  GG    C   CAUAAU 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To To
Star sequence

Ava-Mir-36-P28b_5p*
mirBase accessionNone
Sequence 
0- GAAGAUUGUUUAAACGGUCACU -22
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Mature sequence

Ava-Mir-36-P28b_3p
mirBase accessionNone
Sequence 
37- UCACCGGGUACACACUCUUCCU -59
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