MirGeneDB

MirGeneDB ID

Lgi-Mir-279

Family name MIR-279 (all species)
Seed GACUAGA
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-279
Paralogues
Orthologues Aae-Mir-279-o26  Aae-Mir-279-P1  Aae-Mir-279-P2a  Aae-Mir-279-P2b1  Aae-Mir-279-P2b2  Aae-Mir-279-P3  Asu-Mir-279-o26  Asu-Mir-279-o27  Asu-Mir-279-o28  Asu-Mir-279-o29  Asu-Mir-279-o30  Bge-Mir-279-o35  Bge-Mir-279-o36  Bge-Mir-279-o37  Bge-Mir-279-o38  Bge-Mir-279-o39  Cbr-Mir-279-o7  Cbr-Mir-279-o8a  Cbr-Mir-279-o8b  Cbr-Mir-279-o9  Cbr-Mir-279-o10  Cel-Mir-279-o7  Cel-Mir-279-o8  Cel-Mir-279-o9  Cel-Mir-279-o10  Cgi-Mir-279  Cte-Mir-279-o11  Cte-Mir-279-o12  Cte-Mir-279-o13  Dan-Mir-279-P1  Dan-Mir-279-P2  Dan-Mir-279-P3  Dme-Mir-279-P1  Dme-Mir-279-P2  Dme-Mir-279-P3  Dmo-Mir-279-P1  Dmo-Mir-279-P2  Dmo-Mir-279-P3  Dpu-Mir-279-o1  Dpu-Mir-279-o2  Dpu-Mir-279-o3  Dpu-Mir-279-o4  Dpu-Mir-279-o5  Dpu-Mir-279-o6  Efe-Mir-279-o14  Efe-Mir-279-o15  Efe-Mir-279-o16  Efe-Mir-279-o17  Efe-Mir-279-o18  Efe-Mir-279-o19  Efe-Mir-279-o20  Hme-Mir-279-o31  Hme-Mir-279-o32  Hme-Mir-279-o33  Hme-Mir-279-o34  Isc-Mir-279  Lan-Mir-279-o40  Lan-Mir-279-o41  Tca-Mir-279-o21  Tca-Mir-279-o22  Tca-Mir-279-o23  Tca-Mir-279-o24  Tca-Mir-279-o25 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Lotgi1)
LOTGIsca_70: 133228-133287 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUUCCUGGCAGAGGUUAACCGAUAAAUGGGUGAUUGUGAGUCUGGUGCAUGUUCAUGAUGACGUCAUGACUAGAUCCACACUCAUCCACAGAAGCGGGAAAAAUCAUCUUAGUAACCU
Get precursor sequence
Structure
        10        20          30        40        50          
GCAUUCCUGGCAGAGGUUAA-   AUAAA-|      U    AG      G    UUCAUG 
                     CCG      UGGGUGA UGUG  UCUGGU CAUG      \
                     GGC      ACCUACU ACAC  AGAUCA GUAC      A
UCCAAUGAUUCUACUAAAAAG   GAAGAC^      C    CU      -    UGCAGU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lgi-Mir-279_5p*

MirBase accessionNone
Sequence
0- GGUGAUUGUGAGUCUGGUGCAUG -23
Get sequence
Mature sequence

Lgi-Mir-279_3p

MirBase accessionMIMAT0009593
Sequence
38- UGACUAGAUCCACACUCAUCCA -60
Get sequence