MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-279-P22b

Family name MIR-279 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-279-P21a  Ava-Mir-279-P21b  Ava-Mir-279-P22a  Ava-Mir-279-P23a  Ava-Mir-279-P23b  Ava-Mir-279-P24a  Ava-Mir-279-P24b 
Orthologues Agr-Mir-279  Asu-Mir-279-o22  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075494.1: 8702749-8702810 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P22b)		 Mir-279-P22b CP075494.1: 8702749-8702810 [-] Ensembl
Mir-279-P24a CP075494.1: 8702850-8702910 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UAAAUGUUGUUUUGUGUCGACAUUUUGCAGCAGUUCAUCAUCUUUUAGUCACUUUGUUCAUGUUAAUCAGUGACUAGAGAUUUUGCACUGAUGUAAUUUGUUCAUUGUUUAUCAUUGCUAUA
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Structure
        10          20        30        40        50        60 
UAAAUGUUGUUUUGUGUC--|   UU     G    U  UC      U       UUGUUCA 
                    GACA  UUGCA CAGU CA  AUCUUU AGUCACU       \
                    UUGU  AAUGU GUCA GU  UAGAGA UCAGUGA       U
AUAUCGUUACUAUUUGUUAC^   UU     A    C  UU      -       CUAAUUG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Ava-Mir-279-P22b_5p*
mirBase accessionNone
Sequence 
0- CAGUUCAUCAUCUUUUAGUCACU -23
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Mature sequence

Ava-Mir-279-P22b_3p
mirBase accessionNone
Sequence 
40- UGACUAGAGAUUUUGCACUGAU -62
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