MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-279-P22a

Family name MIR-279 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-279-P21a  Ava-Mir-279-P21b  Ava-Mir-279-P22b  Ava-Mir-279-P23a  Ava-Mir-279-P23b  Ava-Mir-279-P24a  Ava-Mir-279-P24b 
Orthologues Agr-Mir-279  Asu-Mir-279-o22  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 9643694-9643755 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P22a)		 Mir-279-P22a CP075495.1: 9643694-9643755 [-] Ensembl
Mir-279-P24b CP075495.1: 9643795-9643855 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UAGUUUAUGUGUUAUAUUAACUUGUUACAUCAGUCCAUCAUCUUUUAGUCACUUUCGAUAUAUUGAUUAGUGACUAGAGGUUUUGCACUGUUGAAAUUAGUUCAUUAUCCGUCGUUGUCGUA
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Structure
        10          20        30        40        50        60 
UAGUUUAUGUGUUAUAUU--|   U   A  U    C  UCAU            UUCGAUA 
                    AACU GUU CA CAGU CA    CUUUUAGUCACU       \
                    UUGA UAA GU GUCA GU    GGAGAUCAGUGA       U
AUGCUGUUGCUGCCUAUUAC^   U   A  U    C  UUU-            UUAGUUA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Ava-Mir-279-P22a_5p*
mirBase accessionNone
Sequence 
0- CAGUCCAUCAUCUUUUAGUCACU -23
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Mature sequence

Ava-Mir-279-P22a_3p
mirBase accessionNone
Sequence 
40- UGACUAGAGGUUUUGCACUGUU -62
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