| MirGeneDB ID | Dgr-Mir-279-o48 |
|---|---|
| Family name | MIR-279 (all species) |
| Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
| MiRBase ID | |
| Paralogues | Dgr-Mir-279-o49 |
| Orthologues | Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 |
| Node of Origin (locus) | D. gyrociliatus |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000013.1: 1493147-1493208 [+] |
| Clustered miRNAs (< 50kb from Mir-279-o48) |
Mir-67
CAJFCJ010000013.1: 1463074-1463135 [-]
Mir-279-o48 CAJFCJ010000013.1: 1493147-1493208 [+] |
| Seed | GACUAGA |
| Precursor (pre-Mir +30nt flank) |
UUGAUAGAGAGCUACACUGAUUUUCUCCGUUACGAGUGAAAGUCUAGAACAUGUUUUUAUAAAUAUUCAUGACUAGACUUUACACUCGUAAAUGGCGAAAUAUCAAAACGUUAGCAAACUGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUGAUAGAGAGCUACACU - U - -| AA UUUUUA GAU UUUC CCG UUACGAGUG AAAGUCUAG CAUG U CUA AAAG GGU AAUGCUCAC UUUCAGAUC GUAC A AGUCAAACGAUUGCAAAA U C A A^ A- UUAUAA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Dgr-Mir-279-o48_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UACGAGUGAAAGUCUAGAACAUG -23
Get sequence
|
| Mature sequence | Dgr-Mir-279-o48_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGACUAGACUUUACACUCGUAAA -62
Get sequence
|
