| MirGeneDB ID | Dgr-Mir-279-o49 |
|---|---|
| Family name | MIR-279 (all species) |
| Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
| MiRBase ID | |
| Paralogues | Dgr-Mir-279-o48 |
| Orthologues | Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 |
| Node of Origin (locus) | D. gyrociliatus |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000005.1: 1338096-1338160 [+] |
| Clustered miRNAs (< 50kb from Mir-279-o49) |
Mir-279-o49
CAJFCJ010000005.1: 1338096-1338160 [+]
Mir-36 CAJFCJ010000005.1: 1338816-1338875 [+] |
| Seed | GACUAGA |
| Precursor (pre-Mir +30nt flank) |
CGGCGCAGUUUACGUUCUGGCUAAGCGGAGAGUGGGUUGUCGGCCUGGUCGUGAAGAAAAUUCAUUGUACACAUGACUAGACCUACACUCAUUCCUCGUUUUUGCUCUUGUCGUCUUGUAAAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CGGCGCAGUUUACGUUCU- U-| GA U C C AAGAAAAU GGC AAGCG GAGUGGGU GU GG CUGGUCGUG U UCG UUUGC CUUACUCA CA CC GAUCAGUAC C AAAAAAUGUUCUGCUGUUC UU^ UC - U A ACAUGUUA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Dgr-Mir-279-o49_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUGGGUUGUCGGCCUGGUCGUG -23
Get sequence
|
| Mature sequence | Dgr-Mir-279-o49_3p (predicted) |
| mirBase accession | None |
| Sequence |
43- UGACUAGACCUACACUCAUUCC -65
Get sequence
|
