Mir-279-o47

MirGeneDB ID

Pdu-Mir-279-o47

Family name

MIR-279 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-279-o44 Pdu-Mir-279-o45 Pdu-Mir-279-o46

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

P. dumerilii

Node of Origin (family)

Protostomia

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000003.1: 90160575-90160628 [-] Ensembl

Seed

UGACUGU

Precursor
(pre-Mir +30nt flank)

ACUUCAAAGAAGAACUUGCUGACUUCCUGCAUGACUGUAGGUCUAGUCCAUGUUUAAUAUCAUGAUUAGUCAAACACUCAUAGCUGCUUGUUAGCAUAUCCACAAAAUCUAUGA

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Structure

        10          20        30         40        50      
ACUUCAAAGAAGAACUU--      UUCCU  -|   C   AGGU      C   UUU 
                   GCUGAC     GC AUGA UGU    CUAGUC AUG   A
                   CGAUUG     CG UACU ACA    GAUUAG UAC   A
AGUAUCUAAAACACCUAUA      UUCGU  A^   C   AACU      -   UAU 
  110       100        90        80        70         60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-279-o47_5p

mirBase accession

None

Sequence

0- AUGACUGUAGGUCUAGUCCAUG -22

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Star sequence

Pdu-Mir-279-o47_3p*

mirBase accession

None

Sequence

32- UGAUUAGUCAAACACUCAUAGC -54

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