MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-279-o45

Family name MIR-279 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-279-o44  Pdu-Mir-279-o46  Pdu-Mir-279-o47 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000009.1: 2657711-2657763 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o45)		 Mir-36 JAPTHN010000009.1: 2652940-2652998 [-] Ensembl
Mir-279-o45 JAPTHN010000009.1: 2657711-2657763 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
ACUUCAAAGAAGAACUUGCUGCCUUCCUGCAUGACUGUAGGUCUAGUCCAUGUUUAAUGUCAUGACUAGAUCCACACUCAUCCAGGCGGGUUAGCCGAUCUACAUAUCAAUCU
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Structure
        10         20         30        40        50      
ACUUCAAAGAAGAACUU-   -|   U    C    C   A         C   UUU 
                  GCU GCCU CCUG AUGA UGU GGUCUAGUC AUG   A
                  CGA UGGG GGAC UACU ACA CUAGAUCAG UAC   A
UCUAACUAUACAUCUAGC   U^   C    C    C   C         -   UGU 
 110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-279-o45_5p*
mirBase accessionNone
Sequence 
0- AUGACUGUAGGUCUAGUCCAUG -22
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Mature sequence

Pdu-Mir-279-o45_3p
mirBase accessionNone
Sequence 
32- UGACUAGAUCCACACUCAUCC -53
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