MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-279-P2

Family name MIR-279 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279a
Paralogues Tca-Mir-279-o3  Tca-Mir-279-P1c  Tca-Mir-279-P1d  Tca-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG7: 8213635-8213695 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-279-P3 LG7: 8213507-8213566 [-] Ensembl
Mir-279-P2 LG7: 8213635-8213695 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
UUUCUGUAGACGAUAAUUUGAUCCGUUCUUGAUGGGUUCGGGUCUAGUGGCACGGUUUUUUCAACUUCGUGACUAGAUCCACACUCAUUAAGGAAGUUUCACACCACAACAAAAGAAUUAC
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Structure
        10          20        30        40        50        60 
UUUCUGUAGACGAUAAUU--|  UCCG            UC         GG    GUUUUU 
                    UGA    UUCUUGAUGGGU  GGGUCUAGU  CACG      \
                    ACU    AGGAAUUACUCA  CCUAGAUCA  GUGC      U
CAUUAAGAAAACAACACCAC^  UUGA            CA         --    UUCAAC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-279-P2_5p*
mirBase accessionMIMAT0019125
Sequence 
0- GAUGGGUUCGGGUCUAGUGGCACG -24
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Mature sequence

Tca-Mir-279-P2_3p
mirBase accessionMIMAT0008383
Sequence 
39- UGACUAGAUCCACACUCAUUAA -61
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