MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-279-P2

Family name MIR-279 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-279-o5  Bge-Mir-279-o6  Bge-Mir-279-o7  Bge-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ614992.1: 537892-537951 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-279-P3 KZ614992.1: 536335-536392 [-] Ensembl
Mir-279-P2 KZ614992.1: 537892-537951 [-] Ensembl
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
CAACACAAGUGUCAAGUCCUUACAGCCUGUGAUGAGUGUAGGUCUGGUGCACAUGUGUUAAAAAGCUGUGACUAGAUCCACACUCAUCACUGGAGGUGAGAUACAUCUGCGGGGUGAACC
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Structure
        10          20        30        40        50          
CAACACAAGUGUCAAGUC--|    AG  U           A        G    UGUGUU 
                    CUUAC  CC GUGAUGAGUGU GGUCUGGU CACA      \
                    GAGUG  GG CACUACUCACA CUAGAUCA GUGU      A
CCAAGUGGGGCGUCUACAUA^    GA  U           C        -    CGAAAA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- GAUGAGUGUAGGUCUGGUGCACA -23
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Mature sequence

Bge-Mir-279-P2_3p
mirBase accessionNone
Sequence 
38- UGACUAGAUCCACACUCAUCAC -60
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