Mir-279-P27b

MirGeneDB ID

Tur-Mir-279-P27b

Family name

MIR-279 (all species)

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-279

Paralogues

Tur-Mir-279-P26 Tur-Mir-279-P27a

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pca-Mir-279-o27 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

T. urticae

Node of Origin (family)

Protostomia

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587308.1: 2463767-2463829 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P27b)

Mir-279-P27b HE587308.1: 2463767-2463829 [-] Ensembl
Mir-279-P27a HE587308.1: 2468600-2468662 [-] Ensembl

Seed

GACUAGA

Precursor
(pre-Mir +30nt flank)

AUUUUUAUCCCAUACUGGACACUUUGACUGGAUGAAUGCGUUUCUAGACCAUGUUCAUGUUGAACUAUUCAUGACUAGAUCCACAUUCAUCCAGACAGCCAAUUGAUUUUCAAGACCCUUAUA

Get precursor sequence

Structure

        10        20          30        40        50        60 
AUUUUUAUCCCAUACUGGACACU--|  A           CGUU     AC    UUCAUGU 
                         UUG CUGGAUGAAUG    UCUAG  CAUG       U
                         GAC GACCUACUUAC    AGAUC  GUAC       G
AUAUUCCCAGAACUUUUAGUUAACC^  A           ACCU     A-    UUAUCAA 
 120       110       100        90        80         70