MirGeneDB 3.0
MirGeneDB ID

Ofu-Mir-279-o56

Family name MIR-279 (all species)
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-279-o53  Ofu-Mir-279-o54  Ofu-Mir-279-o55  Ofu-Mir-279-o57 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)		 CAIIXF020000001.1: 23396616-23396670 [-]
Clustered miRNAs
(< 50kb from Mir-279-o56)		 Mir-36 CAIIXF020000001.1: 23393833-23393889 [-]
Mir-279-o56 CAIIXF020000001.1: 23396616-23396670 [-]
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
AUUAGUAUUUUAUUUUUGUUGAUUUCCGAGAUGAUUGUGGGUCAAGUCCAUGUUUCAUGUUUCAUGACUAGAUCCACACUCAUCCUGGCGAUUUUCAUAGCAUCGCUGAUAGCAG
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Structure
        10          20        30        40        50       
AUUAGUAUUUUAUUUUU--|UU    U   A     U        A    C   UUUC 
                   G  GAUU CCG GAUGA UGUGGGUC AGUC AUG    A
                   C  UUAG GGU CUACU ACACCUAG UCAG UAC    U
GACGAUAGUCGCUACGAUA^UU    C   C     C        A    -   UUUG 
   110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Ofu-Mir-279-o56_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGAUUGUGGGUCAAGUCCAUG -22
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Mature sequence

Ofu-Mir-279-o56_3p
mirBase accessionNone
Sequence 
34- UGACUAGAUCCACACUCAUCC -55
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