MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-279-o52

Family name MIR-279 (all species)
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-279-o50  Snu-Mir-279-o51 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) S. nudus
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049306.1: 43836958-43837018 [-]
Clustered miRNAs
(< 50kb from Mir-279-o52)		 Mir-279-o52 CM049306.1: 43836958-43837018 [-]
Mir-279-o50 CM049306.1: 43854721-43854776 [-]
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
CAUGGUAAUGAAGAUCGACCUGUUGUCUUUAGGUGAAUGUAUGUCUAGUCCAUGUGUAAAGAGAUUCAUGACUAGAUACACACUCAUCUACAGUGACAGGUCUGAACAGCAGAGAAGAUGA
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Structure
        10           20        30        40        50        60
CAUGGUAAUGAAGAUCG---|       U  U       A   A         C   UGUAA 
                    ACCUGUUG CU UAGGUGA UGU UGUCUAGUC AUG     A
                    UGGACAGU GA AUCUACU ACA AUAGAUCAG UAC     G
AGUAGAAGAGACGACAAGUC^       -  C       C   C         -   UUAGA 
 .       110       100         90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Snu-Mir-279-o52_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUGAAUGUAUGUCUAGUCCAUG -24
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Mature sequence

Snu-Mir-279-o52_3p (predicted)
mirBase accessionNone
Sequence 
38- UGACUAGAUACACACUCAUCUAC -61
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